These sections include links to documentation, tutorials, and literature relating to BioNetGen and its related projects, as well as frequently asked questions.
- Getting Started
- Modeling Reaction Networks with BioNetGen. Introduces basic BioNetGen block syntax, actions, and workflows for simulating models, plotting results, and parameter scanning.
- Rule-Based Modeling with BioNetGen. Introduces the concepts and syntax for modeling biochemical networks using structured molecules and rules in BioNetGen.
- BioNetGen tutorial on GitHub. Provides detailed examples that demonstrate a wide range of language and modeling features.
- MMBioS Cell Modeling Workshop 2021 videos. See videos 1-4, 13 and 15 for basic walkthroughs and more advanced topics using BioNetGen.
- MMBioS Cell Modeling Workshop 2020 videos
- Biological Modeling: Module 2 uses BioNetGen, including step-by-step tutorials