Recent BioNetGen Models

A closer look at the 10 most recent publications from Published BioNetGen Models, with a link to the model code in RuleHub where one has been curated. Auto-generated — do not edit by hand.

Quantitative modelling of P-TEFb mediated CTD phosphorylation identifies local cooperativity.

Callenbach A et al. — PLOS Comput. Biol., 2026. Read the paper.

Not yet archived in RuleHub. Help add it.

IgE Occupancy and Antigen Valency Cooperate to Control FcεRI Aggregation Geometry and Signaling Efficiency.

Linhart B et al. — Int. J. Mol. Sci., 2026. Read the paper.

Not yet archived in RuleHub. Help add it.

Biophysical fitness landscape design traps viral evolution.

Mohanty V et al. — PNAS, 2026. Read the paper.

Not yet archived in RuleHub. Help add it.

Dual RAF inhibition outperforms RAF-MEK combinations for suppressing ERK signaling in KRAS mutant cells.

Imoto H et al. — NPJ Syst. Biol. Appl., 2026. Read the paper.

Not yet archived in RuleHub. Help add it.

A computational rule-based model of MAPK/ERK system regulation.

Kocieniewski P et al. — Sci. Rep., 2026. Read the paper.

Not yet archived in RuleHub. Help add it.

Impact of ligand binding on VEGFR1, VEGFR2, and NRP1 localization in human endothelial cells.

Sarabipour S et al. — PLOS Comput. Biol., 2025. Read the paper.

Not yet archived in RuleHub. Help add it.

A detailed kinetic model of Eastern equine encephalitis virus replication in a susceptible host cell.

Larkin CI et al. — PLOS Comput. Biol., 2025. Read the paper.

Not yet archived in RuleHub. Help add it.

Promoting vascular stability through Src inhibition and Tie2 activation: A model-based analysis.

Zhang Y et al. — iScience, 2025. Read the paper.

Not yet archived in RuleHub. Help add it.

A spatial model of autophosphorylation of CaMKII predicts that the lifetime of phospho-CaMKII after induction of synaptic plasticity is greatly prolonged by CaM-trapping.

Bartol TM et al. — Front. Synaptic Neurosci., 2025. Read the paper.

Not yet archived in RuleHub. Help add it.

SYK negatively regulates ITAM-mediated human NK cell signaling and CD19-CAR NK cell efficacy.

Millan AJ et al. — J. Immunol., 2025. Read the paper.

Not yet archived in RuleHub. Help add it.