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bionetgen

Rule-based modeling framework

FAQ

Parameter syntax

Q: How do I define a parameter in terms of other parameters?

A: Parameters may be defined using C-like expressions (use ^ rather than ** for exponentiation) that involve other parameters. For example, you could define

begin parameters
  alpha 5
  k_A 1e-5
  k_b alpha*k_A
end parameters

You can also use mathematical functions, e.g., sin, exp, log, etc. in these expressions.