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Software that Use BioNetGen

This page links to other software that use BioNetGen code or BNGL-formatted models. Note: This list is a work in progress and may not be complete.

Software

AMICI

BioNetFit

  • Also see PyBioNetFit

BioSimulators

BioUML

Kappa

MCell

ML-Rules

ModelingToolkit.jl

NFsim

Parts&Pools

PySB

  • Also see INDRA (?)

SBML_Multi

Smoldyn

SPATKIN

SRsim

VirtualCell