Wsc09
From BioNetWiki
COMPARTMENTAL RULE-BASED MODELING OF BIOCHEMICAL SYSTEMS
Leonard A. Harris, Justin S. Hogg & James R. Faeder
Invited submission to the Modeling Methodology track of the 2009 Winter Simulation Conference.
Here is a preprint version of the submitted paper. We welcome your comments on both the paper and the cBNGL language.
Contents |
[edit]
Example Files
These files contain the BNGL and cBNGL code for the example system shown in Figure 1 of the paper.
[edit]
Downloading a cBNGL-compatible version of BioNetGen
Download BioNetGen version 2.1.5 or later from BioNetGen Distributions. Be sure to check Release_Notes for additional information about each release.
[edit]
Additional Material
Here is an overview and tutorial of compartmental BNGL. Additional development notes for cBNGL are maintained at this page.
[edit]
