Model Examples
From BioNetWiki
This page provides an extensive though not exhaustive listing of BioNetGen models that are meant to illustrate a wide range of BioNetGen capabilities and provide many specific examples of how signaling biochemistry can be modeled using the rule-based approach.
This page is currently under construction. Please excuse the missing links and other debris.
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Models from the BNG Bible
These models are a good starting point for understanding basic BioNetGen usage.
- egfr_simple - A simple model of EGFR aggregation and Sos recruitment. Illustrates specification of parameters in a consistent set of units and all basic elements of model specification.
- flabel
- blbr
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Models in the BioNetGen Distribution
The source code for each model (BioNetGen language files with the .bngl extension) is included in the Models2 directory of the BioNetGen distribution.
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Models from Published Papers
- Faeder2003
- Faeder2005
- Blinov2006
- Barua2007
- Barua2008
- Borisov2008
- Lipniacki2008
- Mu2008
- An2009
- Barua2009
- Harris2009
- Nag2009
- Monine2010
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