Credits

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The following people have contributed to BioNetGen code development:

Michael L. Blinov <blinov@uchc.edu>

  • Original author.
  • Testing and development of new ideas.
  • Developed interface to Virtual Cell.

James R. Faeder <faeder@pitt.edu>

  • Primary BioNetGen developer since version 1.0.
  • Testing and development of new ideas.
  • Code maintainer.
  • Current project co-PI.

William S. Hlavacek <wish@lanl.gov>

  • Driving force in the development.
  • Testing and development of new ideas.
  • Current project PI.

Byron Goldstein <bxg@lanl.gov>

  • Pioneered concept of signaling models based on multivalent interactions.
  • Original project PI.

Jeremy Kozdon <jkozdon@stanford.edu>

  • Code for use of sparse Jacobian in CVODE calls, which greatly accelerates

ODE integration for large networks (sparse=>1 option).

Nathan Lemons <nlemons@gmail.com>

  • HNauty code for canonical labeling of hierarchical graphs, which is (optionally) used

in network generation,.

Matthew Fricke <matthew@gofigure.org>

Leigh Fanning <leigh@verseira.net>

  • Contributor to RuleBuilder development.
  • Developed RuleBuilder help system.

Robert Seletsky <robert1unm@yahoo.com>

  • Testing of BioNetGen and RuleBuilder.

Sarah Faeder <smgfaeder@gmail.com>

  • Contributor of PhiBPlot.
  • Testing and bug fixes for RuleBuilder.

Nikolay Borisov <nikolay.borisov@jefferson.edu>

  • Primary developer of Macro module.
  • Testing of BioNetGen.

Mikhail Kravchenko <krmisha@rambler.ru>

  • Implementation of macro code.
  • Streamlining of BioNetGen interface.

Alexander S. Chistopolsky <eroxi@savelovo.net>

  • Developer of macro algorithm

Marc Birtwistle <mrbirdy@udel.edu>

  • Contributor of parameter sensitivity code.
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